PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007642.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 284aa    MW: 32110.7 Da    PI: 6.7261
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007642.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.82.5e-4141411127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                  lppG+rF Pt+eel+++yL++k++gk+   +++ + +++ v iy+++Pw+Lp+      ++++++w+fF++r+ ++a+g r++r t++gyWkatg+  
  Pbr007642.1   4 LPPGYRFYPTEEELISFYLQNKLDGKSedlNRVLDrIVPVVYIYEFNPWELPQvsgeVSHEDQEQWFFFIPRQASEARGGRPRRLTTTGYWKATGSPS 101
                  79*************************665333332578889*********96566433346669********************************* PP

          NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                  +v+s+    ++ +g k+t+ fy grap+g+kt+W+m+ey+
  Pbr007642.1 102 TVYSSksnYNRPIGHKRTMGFYIGRAPRGKKTEWMMNEYK 141
                  ****85544555***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-433183IPR003441NAC domain
PROSITE profilePS5100546.7474183IPR003441NAC domain
PfamPF023652.1E-215141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEDLPPGYRF YPTEEELISF YLQNKLDGKS EDLNRVLDRI VPVVYIYEFN PWELPQVSGE  60
VSHEDQEQWF FFIPRQASEA RGGRPRRLTT TGYWKATGSP STVYSSKSNY NRPIGHKRTM  120
GFYIGRAPRG KKTEWMMNEY KAIEVHADHS NHLSMAASSS NTSSSTPAPT LREEFSLCRV  180
YKKSKCLIRA FDRRPPGIEI TRNPSLIIQA APAQGANHLD HGSTTSNRNP QNMGERTNLS  240
SLESSSSGNH GSQSSQPEQS GSLLMAVDNE AIWDWDELMD NWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-31418317165NO APICAL MERISTEM PROTEIN
1ut4_B1e-31418317165NO APICAL MERISTEM PROTEIN
1ut7_A1e-31418317165NO APICAL MERISTEM PROTEIN
1ut7_B1e-31418317165NO APICAL MERISTEM PROTEIN
4dul_A1e-31418317165NAC domain-containing protein 19
4dul_B1e-31418317165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366767.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLM5VSR51e-123M5VSR5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s22580.12e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-52NAC domain containing protein 90